==> Building on reshiram ==> Checking for remote environment... ==> Syncing package to remote host... sending incremental file list created directory packages/avogadrolibs ./ .SRCINFO 1,506 100% 0.00kB/s 0:00:00 1,506 100% 0.00kB/s 0:00:00 (xfr#1, to-chk=2/4) PKGBUILD 2,950 100% 2.81MB/s 0:00:00 2,950 100% 2.81MB/s 0:00:00 (xfr#2, to-chk=1/4) avogadrolibs-1.98.1-1.log 367 100% 358.40kB/s 0:00:00 367 100% 358.40kB/s 0:00:00 (xfr#3, to-chk=0/4) sent 2,207 bytes received 120 bytes 4,654.00 bytes/sec total size is 4,651 speedup is 2.00 ==> Patching arch to riscv64... ==> Running extra-riscv64-build -- -d /home/felix/packages/riscv64-pkg-cache:/var/cache/pacman/pkg -l felix2 on remote host... ==> Locking clean chroot...done [?25l:: Synchronizing package databases... core downloading... extra downloading... :: Starting full system upgrade... there is nothing to do [?25h==> Building in chroot for [extra] (riscv64)... ==> Synchronizing chroot copy [/var/lib/archbuild/extra-riscv64/root] -> [felix2]...done ==> Making package: avogadrolibs 1.98.1-1 (Thu Nov 9 04:06:44 2023) ==> Retrieving sources...  -> Downloading avogadrolibs-1.98.1.tar.gz... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 354k 0 354k 0 0 247k 0 --:--:-- 0:00:01 --:--:-- 247k 100 4494k 0 4494k 0 0 2323k 0 --:--:-- 0:00:01 --:--:-- 8264k ==> Validating source files with sha256sums... avogadrolibs-1.98.1.tar.gz ... Passed ==> Making package: avogadrolibs 1.98.1-1 (Thu Nov 9 04:07:39 2023) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> Installing missing dependencies... [?25lresolving dependencies... looking for conflicting packages... warning: dependency cycle detected: warning: mesa will be installed before its libglvnd dependency warning: dependency cycle detected: warning: harfbuzz will be installed before its freetype2 dependency Package (114) New Version Net Change Download Size core/argon2 20190702-5 0.08 MiB extra/avahi 1:0.8+r139+ge5b0bad-1 1.75 MiB extra/boost-libs 1.83.0-2.1 6.69 MiB 2.30 MiB extra/cppdap 1.58.0-1 1.37 MiB core/cryptsetup 2.6.1-3 2.50 MiB core/dbus 1.14.10-1 0.80 MiB extra/default-cursors 2-1 0.00 MiB core/device-mapper 2.03.22-2 0.68 MiB core/dnssec-anchors 20190629-3 0.00 MiB extra/double-conversion 3.3.0-1 0.17 MiB extra/duktape 2.7.0-6 0.73 MiB extra/fontconfig 2:2.14.2-1 1.00 MiB extra/freetype2 2.13.2-1 1.51 MiB extra/glu 9.0.3-1 0.27 MiB extra/graphite 1:1.3.14-3 0.17 MiB extra/harfbuzz 8.2.2-1 3.66 MiB extra/hicolor-icon-theme 0.17-3 0.05 MiB core/hwdata 0.375-2 8.88 MiB extra/hwloc 2.9.1-1 1.31 MiB core/iptables 1:1.8.9-1 1.74 MiB extra/jbigkit 2.1-7 0.13 MiB extra/jsoncpp 1.9.5-2 1.24 MiB core/kbd 2.6.3-1 3.01 MiB core/kmod 31-1 0.25 MiB core/ldns 1.8.3-2 1.71 MiB extra/libaec 1.0.6-1 0.09 MiB extra/libcups 1:2.4.7-2 0.77 MiB extra/libdaemon 0.14-5 0.05 MiB extra/libdrm 2.4.117-1 1.13 MiB core/libedit 20230828_3.1-1 0.24 MiB extra/libevdev 1.13.1-1 0.24 MiB extra/libglvnd 1.7.0-1 3.72 MiB extra/libgudev 238-1 0.38 MiB extra/libice 1.1.1-2 0.33 MiB extra/libinput 1.24.0-1 0.95 MiB extra/libjpeg-turbo 3.0.1-1 1.81 MiB core/libmnl 1.0.5-1 0.03 MiB core/libnetfilter_conntrack 1.0.9-1 0.14 MiB core/libnfnetlink 1.0.2-1 0.04 MiB core/libnftnl 1.2.6-1 0.22 MiB core/libnl 3.8.0-1 1.73 MiB core/libnsl 2.0.1-1 0.07 MiB extra/libomxil-bellagio 0.9.3-4 0.54 MiB core/libpcap 1.10.4-1 0.58 MiB extra/libpciaccess 0.17-1 0.05 MiB extra/libpng 1.6.40-2 0.51 MiB extra/libproxy 0.5.3-2 0.08 MiB extra/libsm 1.2.4-1 0.25 MiB extra/libtiff 4.6.0-1 4.95 MiB extra/libunwind 1.7.2-1 0.23 MiB extra/libuv 1.47.0-1 0.55 MiB 0.24 MiB extra/libwacom 2.8.0-1 0.69 MiB extra/libx11 1.8.7-1 9.66 MiB extra/libxau 1.0.11-2 0.02 MiB extra/libxcb 1.16-1 3.68 MiB extra/libxdamage 1.1.6-1 0.01 MiB extra/libxdmcp 1.1.4-2 0.12 MiB extra/libxext 1.3.5-1 0.29 MiB extra/libxfixes 6.0.1-1 0.03 MiB extra/libxi 1.8.1-1 0.46 MiB extra/libxkbcommon 1.6.0-1 0.74 MiB extra/libxkbcommon-x11 1.6.0-1 0.06 MiB extra/libxmu 1.1.4-1 0.32 MiB extra/libxrender 0.9.11-1 0.08 MiB extra/libxshmfence 1.3.2-1 0.01 MiB extra/libxt 1.3.0-1 1.96 MiB extra/libxxf86vm 1.1.5-1.1 0.03 MiB extra/llvm-libs 16.0.6-1 115.87 MiB extra/lm_sensors 1:3.6.0.r41.g31d1f125-2 0.41 MiB extra/md4c 0.4.8-1 0.22 MiB extra/mesa 1:23.2.1-2.1 67.80 MiB extra/msgpack-cxx 5.0.0-1 5.08 MiB 0.25 MiB extra/mtdev 1.1.6-2 0.04 MiB extra/openpmix 4.2.6-1 3.09 MiB core/openssh 9.5p1-1 4.27 MiB core/popt 1.19-1 0.55 MiB extra/pugixml 1.14-1 0.27 MiB 0.10 MiB extra/qt5-base 5.15.11+kde+r138-1 95.68 MiB extra/qt5-translations 5.15.11-1 14.71 MiB extra/rhash 1.4.4-1 0.31 MiB extra/shared-mime-info 2.3-1 4.52 MiB core/systemd 254.5-1.1 27.04 MiB extra/tslib 1.22-1 0.33 MiB extra/vulkan-icd-loader 1.3.269-1 0.51 MiB extra/wayland 1.22.0-1 0.74 MiB extra/xcb-proto 1.16.0-1 1.04 MiB extra/xcb-util 0.4.1-1 0.03 MiB extra/xcb-util-image 0.4.1-2 0.05 MiB extra/xcb-util-keysyms 0.4.1-4 0.01 MiB extra/xcb-util-renderutil 0.3.10-1 0.02 MiB extra/xcb-util-wm 0.4.2-1 0.20 MiB extra/xdg-utils 1.1.3+45+g301a1a4-1 0.28 MiB extra/xkeyboard-config 2.40-1 6.55 MiB extra/xorg-xprop 1.2.6-1 0.04 MiB extra/xorg-xset 1.2.5-1 0.03 MiB extra/xorgproto 2023.2-1 1.43 MiB extra/boost 1.83.0-2.1 314.26 MiB 28.19 MiB extra/cmake 3.27.7-2 62.35 MiB extra/eigen 3.4.0-1 8.37 MiB extra/fmt 10.1.1-1 1.50 MiB extra/genxrdpattern 1.1-3 3.38 MiB 1.44 MiB extra/glew 2.2.0-6 3.46 MiB extra/hdf5 1.14.3-1 10.54 MiB 3.71 MiB extra/libmsym 0.2.3-8 0.20 MiB 0.09 MiB extra/mmtf-cpp 1.1.0-1 0.11 MiB 0.02 MiB extra/nlohmann-json 3.11.2-2 0.98 MiB 0.14 MiB extra/onetbb 2021.10.0-1 1.73 MiB 0.34 MiB extra/openmpi 4.1.5-5 7.34 MiB extra/pybind11 2.11.1-1 0.87 MiB core/python 3.11.5-2.1 107.29 MiB extra/qt5-svg 5.15.11+kde+r6-1 0.43 MiB extra/qt5-tools 5.15.11+kde+r3-1 20.17 MiB extra/spglib 2.1.0-2 1.94 MiB 0.25 MiB extra/vtk 9.2.6-11 255.41 MiB 53.95 MiB Total Download Size: 91.02 MiB Total Installed Size: 1228.97 MiB :: Proceed with installation? [Y/n] :: Retrieving packages... vtk-9.2.6-11-riscv64 downloading... boost-1.83.0-2.1-riscv64 downloading... hdf5-1.14.3-1-riscv64 downloading... boost-libs-1.83.0-2.1-riscv64 downloading... genxrdpattern-1.1-3-riscv64 downloading... onetbb-2021.10.0-1-riscv64 downloading... spglib-2.1.0-2-riscv64 downloading... msgpack-cxx-5.0.0-1-any downloading... libuv-1.47.0-1-riscv64 downloading... nlohmann-json-3.11.2-2-any downloading... pugixml-1.14-1-riscv64 downloading... libmsym-0.2.3-8-riscv64 downloading... mmtf-cpp-1.1.0-1-any downloading... checking keyring... checking package integrity... loading package files... checking for file conflicts... :: Processing package changes... installing boost-libs... Optional dependencies for boost-libs openmpi: for mpi support [pending] installing boost... Optional dependencies for boost python: for python bindings [pending] installing hicolor-icon-theme... installing jsoncpp... Optional dependencies for jsoncpp jsoncpp-doc: documentation installing libnsl... installing libuv... installing rhash... installing cppdap... installing cmake... Optional dependencies for cmake make: for unix Makefile generator [installed] ninja: for ninja generator qt6-base: cmake-gui installing eigen... installing fmt... installing libaec... installing hdf5... installing genxrdpattern... installing xcb-proto... installing xorgproto... installing libxdmcp... installing libxau... installing libxcb... installing libx11... installing libxext... installing libpciaccess... installing libdrm... Optional dependencies for libdrm cairo: needed for modetest tool installing libunwind... installing libxfixes... installing libxdamage... installing libxshmfence... installing libxxf86vm... installing libedit... installing llvm-libs... installing lm_sensors... Optional dependencies for lm_sensors rrdtool: for logging with sensord perl: for sensor detection and configuration convert [installed] installing vulkan-icd-loader... Optional dependencies for vulkan-icd-loader vulkan-driver: packaged vulkan driver installing default-cursors... Optional dependencies for default-cursors adwaita-cursors: default cursor theme installing wayland... installing libomxil-bellagio... installing mesa... Optional dependencies for mesa opengl-man-pages: for the OpenGL API man pages installing libglvnd... installing glu... installing glew... Optional dependencies for glew libx11: for glxewinfo and visualinfo [installed] installing libmsym... Optional dependencies for libmsym python: Python bindings [pending] installing msgpack-cxx... installing mmtf-cpp... installing nlohmann-json... installing hwloc... Optional dependencies for hwloc cairo libxml2 [installed] pciutils libx11 [installed] installing libnl... installing openpmix... Optional dependencies for openpmix openpmix-docs: for documentation installing dnssec-anchors... installing ldns... Optional dependencies for ldns libpcap: ldns-dpa tool [pending] installing openssh... Optional dependencies for openssh libfido2: FIDO/U2F support sh: for ssh-copy-id and findssl.sh [installed] x11-ssh-askpass: input passphrase in X xorg-xauth: X11 forwarding installing openmpi... Optional dependencies for openmpi gcc-fortran: fortran support perl: for aggregate_profile.pl and profile2mat.pl [installed] installing pybind11... Optional dependencies for pybind11 python-setuptools: for python bindings installing python... Optional dependencies for python python-setuptools: for building Python packages using tooling that is usually bundled with Python python-pip: for installing Python packages using tooling that is usually bundled with Python python-pipx: for installing Python software not packaged on Arch Linux sqlite: for a default database integration [installed] mpdecimal: for decimal xz: for lzma [installed] tk: for tkinter installing libjpeg-turbo... Optional dependencies for libjpeg-turbo java-runtime>11: for TurboJPEG Java wrapper installing xcb-util-keysyms... installing xcb-util-renderutil... installing libpng... installing graphite... Optional dependencies for graphite graphite-docs: Documentation installing harfbuzz... Optional dependencies for harfbuzz harfbuzz-utils: utilities installing freetype2... installing fontconfig... Creating fontconfig configuration... Rebuilding fontconfig cache... installing libice... installing libsm... installing libxt... installing libxmu... installing xorg-xset... installing xorg-xprop... installing xdg-utils... Optional dependencies for xdg-utils kde-cli-tools: for KDE Plasma5 support in xdg-open exo: for Xfce support in xdg-open pcmanfm: for LXDE support in xdg-open perl-file-mimeinfo: for generic support in xdg-open perl-net-dbus: Perl extension to dbus used in xdg-screensaver perl-x11-protocol: Perl X11 protocol used in xdg-screensaver installing shared-mime-info... installing xcb-util-wm... installing libxrender... installing libxi... installing xcb-util... installing xcb-util-image... installing tslib... installing mtdev... installing device-mapper... installing popt... installing argon2... installing cryptsetup... installing dbus... installing libmnl... installing libnftnl... installing libpcap... installing libnfnetlink... installing libnetfilter_conntrack... installing iptables... installing kbd... installing kmod... installing hwdata... installing systemd... warning: directory permissions differ on /var/log/journal/ filesystem: 755 package: 2755 Creating group 'sys' with GID 3. Creating group 'mem' with GID 8. Creating group 'ftp' with GID 11. Creating group 'mail' with GID 12. Creating group 'log' with GID 19. Creating group 'smmsp' with GID 25. Creating group 'proc' with GID 26. Creating group 'games' with GID 50. Creating group 'lock' with GID 54. Creating group 'network' with GID 90. Creating group 'floppy' with GID 94. Creating group 'scanner' with GID 96. Creating group 'power' with GID 98. Creating group 'nobody' with GID 65534. Creating group 'adm' with GID 999. Creating group 'wheel' with GID 998. Creating group 'utmp' with GID 997. Creating group 'audio' with GID 996. Creating group 'disk' with GID 995. Creating group 'input' with GID 994. Creating group 'kmem' with GID 993. Creating group 'kvm' with GID 992. Creating group 'lp' with GID 991. Creating group 'optical' with GID 990. Creating group 'render' with GID 989. Creating group 'sgx' with GID 988. Creating group 'storage' with GID 987. Creating group 'tty' with GID 5. Creating group 'uucp' with GID 986. Creating group 'video' with GID 985. Creating group 'users' with GID 984. Creating group 'groups' with GID 983. Creating group 'systemd-journal' with GID 982. Creating group 'rfkill' with GID 981. Creating group 'bin' with GID 1. Creating user 'bin' (n/a) with UID 1 and GID 1. Creating group 'daemon' with GID 2. Creating user 'daemon' (n/a) with UID 2 and GID 2. Creating user 'mail' (n/a) with UID 8 and GID 12. Creating user 'ftp' (n/a) with UID 14 and GID 11. Creating group 'http' with GID 33. Creating user 'http' (n/a) with UID 33 and GID 33. Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. Creating group 'dbus' with GID 81. Creating user 'dbus' (System Message Bus) with UID 81 and GID 81. Creating group 'systemd-coredump' with GID 980. Creating user 'systemd-coredump' (systemd Core Dumper) with UID 980 and GID 980. Creating group 'systemd-network' with GID 979. Creating user 'systemd-network' (systemd Network Management) with UID 979 and GID 979. Creating group 'systemd-oom' with GID 978. Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 978 and GID 978. Creating group 'systemd-journal-remote' with GID 977. Creating user 'systemd-journal-remote' (systemd Journal Remote) with UID 977 and GID 977. Creating group 'systemd-journal-upload' with GID 976. Creating user 'systemd-journal-upload' (systemd Journal Upload) with UID 976 and GID 976. Creating group 'systemd-resolve' with GID 975. Creating user 'systemd-resolve' (systemd Resolver) with UID 975 and GID 975. Creating group 'systemd-timesync' with GID 974. Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 974 and GID 974. Creating group 'tss' with GID 973. Creating user 'tss' (tss user for tpm2) with UID 973 and GID 973. Creating group 'uuidd' with GID 68. Creating user 'uuidd' (n/a) with UID 68 and GID 68. Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /usr/lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /usr/lib/systemd/system/remote-fs.target. Optional dependencies for systemd libmicrohttpd: systemd-journal-gatewayd and systemd-journal-remote quota-tools: kernel-level quota management systemd-sysvcompat: symlink package to provide sysvinit binaries systemd-ukify: combine kernel and initrd into a signed Unified Kernel Image polkit: allow administration as unprivileged user python: Unified Kernel Image with ukify [installed] curl: systemd-journal-upload, machinectl pull-tar and pull-raw [installed] gnutls: systemd-journal-gatewayd and systemd-journal-remote [installed] libbpf: support BPF programs libfido2: unlocking LUKS2 volumes with FIDO2 token libp11-kit: support PKCS#11 [installed] tpm2-tss: unlocking LUKS2 volumes with TPM2 [installed] installing libevdev... installing libgudev... installing libwacom... Optional dependencies for libwacom python-libevdev: for libwacom-show-stylus python-pyudev: for libwacom-show-stylus installing libinput... Optional dependencies for libinput gtk4: libinput debug-gui python-pyudev: libinput measure python-libevdev: libinput measure installing xkeyboard-config... installing libxkbcommon... Optional dependencies for libxkbcommon libxkbcommon-x11: xkbcli interactive-x11 [pending] wayland: xkbcli interactive-wayland [installed] installing libxkbcommon-x11... installing duktape... installing libproxy... installing libdaemon... installing avahi... Optional dependencies for avahi gtk3: avahi-discover, avahi-discover-standalone, bshell, bssh, bvnc libevent: libevent bindings [installed] nss-mdns: NSS support for mDNS python-dbus: avahi-bookmarks, avahi-discover python-gobject: avahi-bookmarks, avahi-discover python-twisted: avahi-bookmarks qt5-base: qt5 bindings [pending] installing libcups... installing double-conversion... installing md4c... installing qt5-translations... installing qt5-base... Optional dependencies for qt5-base qt5-svg: to use SVG icon themes [pending] qt5-wayland: to run Qt applications in a Wayland session postgresql-libs: PostgreSQL driver mariadb-libs: MariaDB driver unixodbc: ODBC driver libfbclient: Firebird/iBase driver freetds: MS SQL driver gtk3: GTK platform plugin perl: for fixqt4headers and syncqt [installed] installing qt5-svg... installing qt5-tools... Optional dependencies for qt5-tools clang: for qdoc installing spglib... Optional dependencies for spglib gcc-libs: Fortran interface [installed] python-numpy: Python interface installing onetbb... installing jbigkit... installing libtiff... Optional dependencies for libtiff freeglut: for using tiffgt installing pugixml... installing vtk... Optional dependencies for vtk adios2 cgns ffmpeg fmt [installed] gdal gl2ps glew [installed] gnuplot: plotting tools graphviz: drawing tools hdf5 [installed] java-runtime=11: java bindings jsoncpp [installed] libarchive [installed] libharu liblas lz4 [installed] mariadb-libs netcdf openmpi: OpenMPI support [installed] openvdb openvr openxr pdal postgresql-libs proj python: python bindings [installed] python-matplotlib: for Matplotlib rendering python-mpi4py: OpenMPI python support qt5-declarative: QML plugin sqlite [installed] tk: tcl bindings unixodbc verdict :: Running post-transaction hooks... ( 1/12) Creating system user accounts... Creating group 'avahi' with GID 972. Creating user 'avahi' (Avahi mDNS/DNS-SD daemon) with UID 972 and GID 972. ( 2/12) Updating journal message catalog... ( 3/12) Reloading system manager configuration... Skipped: Current root is not booted. ( 4/12) Updating udev hardware database... ( 5/12) Applying kernel sysctl settings... Skipped: Current root is not booted. ( 6/12) Creating temporary files... ( 7/12) Reloading device manager configuration... Skipped: Device manager is not running. ( 8/12) Arming ConditionNeedsUpdate... ( 9/12) Updating the MIME type database... (10/12) Updating fontconfig configuration... (11/12) Reloading system bus configuration... Skipped: Current root is not booted. (12/12) Updating fontconfig cache... [?25h==> Retrieving sources...  -> Found avogadrolibs-1.98.1.tar.gz ==> WARNING: Skipping all source file integrity checks. ==> Extracting sources...  -> Extracting avogadrolibs-1.98.1.tar.gz with bsdtar ==> Starting prepare()... ==> Starting build()... -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting build type to 'Release' as none was specified. -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.98.1 -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found suitable version "3.11.2", minimum required is "3.3.0") -- Found Eigen3: /usr/include/eigen3 (found version "3.4.0") -- Found SPGLIB: /usr/include -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found HDF5: /usr/lib/libhdf5.so;/usr/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.a;/usr/lib/libm.so (found version "1.14.3") found components: C -- Found MMTF: /usr/include -- Found OpenGL: /usr/lib/libOpenGL.so -- Found GLEW: /usr/include (found version "2.2.0") CMake Warning (dev) at avogadro/qtgui/CMakeLists.txt:22 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.5", minimum required is "3") -- Found MPI_C: /usr/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found GLEW: /usr/lib/libGLEW.so -- Found OpenGL: /usr/lib/libOpenGL.so found components: OpenGL -- Found EXPAT: /usr/lib/libexpat.so (found version "2.5.0") -- Found LZMA: /usr/lib/liblzma.so (found version "5.4.5") -- Found LZ4: /usr/lib/liblz4.so (found version "1.9.4") -- Found double-conversion: /usr/lib/libdouble-conversion.so -- Found TIFF: /usr/lib/libtiff.so (found version "4.6.0") -- Found ZLIB: /usr/lib/libz.so (found version "1.3") -- Found PNG: /usr/lib/libpng.so (found version "1.6.40") -- Found JPEG: /usr/lib/libjpeg.so (found version "80") -- Found Freetype: /usr/lib/libfreetype.so (found version "2.13.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Could NOT find utf8cpp (missing: utf8cpp_INCLUDE_DIR) Avogadro Generators not found at /build/avogadrolibs/src/avogadrolibs-1.98.1/../avogadrogenerators! -- Found LibArchive: /usr/lib/libarchive.so (found version "3.7.2") -- Found OpenGL: /usr/lib/libOpenGL.so -- Found GLEW: /usr/include (found version "2.2.0") CMake Deprecation Warning at python/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Python: /usr/bin/python3.11 (found version "3.11.5") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- Configuring done (93.2s) -- Generating done (2.7s) -- Build files have been written to: /build/avogadrolibs/src/build [ 0%] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct.c.o [ 0%] Built target Headers [ 0%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o [ 0%] Building CXX object utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o [ 0%] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct_endian.c.o [ 0%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o [ 0%] Building C object 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avogadro/core/CMakeFiles/Core.dir/cube.cpp.o [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/elements.cpp.o [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/dihedraliterator.cpp.o [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussianset.cpp.o [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussiansettools.cpp.o [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/graph.cpp.o [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/layer.cpp.o [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/layermanager.cpp.o [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/residue.cpp.o [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/secondarystructure.cpp.o [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/version.cpp.o [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o /build/avogadrolibs/src/avogadrolibs-1.98.1/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0()’: /build/avogadrolibs/src/avogadrolibs-1.98.1/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 162 | } // namespace Avogadro | ^ [ 5%] Linking CXX shared library ../../lib/libAvogadroCore.so /usr/src/debug/avogadrolibs/avogadrolibs-1.98.1/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0’: /usr/src/debug/avogadrolibs/avogadrolibs-1.98.1/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without [ 5%] Built target Core [ 5%] Encoding /build/avogadrolibs/src/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase_vs.glsl [ 6%] Building CXX object python/CMakeFiles/avogadrocorepython.dir/core.cpp.o [ 6%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o [ 6%] Encoding /build/avogadrolibs/src/avogadrolibs-1.98.1/avogadro/rendering/arrow_vs.glsl [ 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/build/avogadrolibs/src/avogadrolibs-1.98.1/avogadro/rendering/textlabelbase_fs.glsl [ 9%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o [ 9%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o [ 9%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o [ 9%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o [ 10%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o [ 10%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o [ 10%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o [ 10%] Linking CXX shared module ../lib/avogadro/core.cpython-311-riscv64-linux-gnu.so [ 10%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o [ 10%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o [ 11%] Building CXX object 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avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o [ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textproperties.cpp.o [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/transformnode.cpp.o [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o [ 18%] Linking CXX shared library ../../lib/libAvogadroIO.so [ 18%] Linking CXX shared library ../../lib/libAvogadroRendering.so during RTL pass: ree /usr/src/debug/avogadrolibs/avogadrolibs-1.98.1/avogadro/io/cjsonformat.cpp: In member function ‘write’: /usr/src/debug/avogadrolibs/avogadrolibs-1.98.1/avogadro/io/cjsonformat.cpp:1049:1: internal compiler error: Segmentation fault 0xdfd2d3 internal_error(char const*, ...) ???:0 0x2cc665 df_maybe_reorganize_def_refs(df_ref_order) ???:0 0x2dad3d df_analyze_problem(dataflow*, bitmap_head*, int*, int) ???:0 Please submit a full bug report, with preprocessed source (by using -freport-bug). Please include the complete backtrace with any bug report. See for instructions. make[3]: *** [/tmp/cceugoWJ.mk:5: /tmp/cc7iw3I0.ltrans1.ltrans.o] Error 1 make[3]: *** Waiting for unfinished jobs.... lto-wrapper: fatal error: make returned 2 exit status compilation terminated. /usr/bin/ld: error: lto-wrapper failed collect2: error: ld returned 1 exit status make[2]: *** [avogadro/io/CMakeFiles/IO.dir/build.make:325: lib/libAvogadroIO.so.1.98.1] Error 1 make[1]: *** [CMakeFiles/Makefile2:1882: avogadro/io/CMakeFiles/IO.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 18%] Built target Rendering make: *** [Makefile:136: all] Error 2 ==> ERROR: A failure occurred in build().  Aborting... ==> ERROR: Build failed, check /var/lib/archbuild/extra-riscv64/felix2/build receiving incremental file list avogadrolibs-1.98.1-1-riscv64-build.log avogadrolibs-1.98.1-1-riscv64-prepare.log sent 62 bytes received 3,827 bytes 7,778.00 bytes/sec total size is 17,976 speedup is 4.62